CASSIA

Collaborative Agent System for Single Cell Interpretable Annotation

Note: This web interface provides basic CASSIA functionality. For enhanced speed and complete analysis options, please use our R/Python packages.

Accepts two CSV formats
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1. FindAllMarkers Output Format:

p_val,avg_log2FC,pct.1,pct.2,cluster,gene
0,16.15103,0.788,0.008,B cell,CD79A
0,20.32707,0.788,0.009,B cell,MS4A1
0,8.266527,0.701,0.058,B cell,CD79B
...

2. Processed Format:

cluster,markers
B cells,"CD79A,MS4A1,CD79B,CD19"
T cells,"CD3D,CD3E,CD3G,CD4"
Monocytes,"CD14,CD68,CD163,CSF1R"
...
Enter your API key for the selected service
Recommended model for selected API type
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Number of cell types to process simultaneously. Higher numbers can speed up analysis significantly.
  • Recommended: Match your CPU cores (default: 6)
  • Minimum: 1 (slower)